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* [sperrorest](https://cran.r-project.org/web/packages/sperrorest/index.html) - Implements spatial error estimation and permutation-based variable importance measures for predictive models using spatial cross-validation and spatial block bootstrap.
* [sgeostat](https://cran.r-project.org/web/packages/sgeostat/index.html) - An Object-oriented Framework for Geostatistical Modeling in S+ containing functions for variogram estimation, variogram fitting and kriging as well as some plot functions.
* [spatialCovariance](https://cran.r-project.org/web/packages/spatialCovariance/index.html) - Supports the computation of spatial covariance matrices for data on rectangles.
* [tgp](https://cran.r-project.org/web/packages/tgp/index.html) - Bayesian nonstationary, semiparametric nonlinear regression and design by treed Gaussian processes (GPs) with jumps to the limiting linear model (LLM).
* [regress](https://cran.r-project.org/web/packages/regress/index.html) - Functions to fit Gaussian linear model by maximising the residual log likelihood where the covariance structure can be written as a linear combination of known matrices.
* [FieldSim](https://cran.r-project.org/web/packages/FieldSim/index.html) - Tools for random fields and bridges simulations.
* [georob](https://cran.r-project.org/web/packages/georob/index.html) - Provides functions for fitting linear models with spatially correlated errors by robust and Gaussian Restricted Maximum Likelihood and for computing robust and customary point and block kriging predictions, along with utility functions for cross-validation and for unbiased back-transformation of kriging predictions of log-transformed data.
* [ExceedanceTools](https://cran.r-project.org/web/packages/ExceedanceTools/index.html) - Tools for constructing confidence regions for exceedance regions and contour lines.
* [deldir](https://cran.r-project.org/web/packages/deldir/index.html) - Calculates the Delaunay triangulation and the Dirichlet or Voronoi tessellation (with respect to the entire plane) of a planar point set.
* [tripack](https://cran.r-project.org/web/packages/tripack/index.html) - A constrained two-dimensional Delaunay triangulation package providing both triangulation and generation of voronoi mosaics of irregular spaced data.
* [ipdw](https://cran.r-project.org/web/packages/ipdw/index.html) - Functions are provided to interpolate geo-referenced point data via Inverse Path Distance Weighting.
* [SSN](https://cran.r-project.org/web/packages/SSN/index.html) - Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance.
* [spmoran](https://cran.r-project.org/web/packages/spmoran/index.html) - Functions for estimating fixed and random effects eigenvector spatial filtering models.
* [SpatialEpi](https://cran.r-project.org/web/packages/SpatialEpi/index.html) - Methods and data for cluster detection and disease mapping.
* [OasisR](https://cran.r-project.org/web/packages/OasisR/index.html) - A set of indexes and tests for the analysis of social segregation.
* [smerc](https://cran.r-project.org/web/packages/smerc/index.html) - Provides statistical methods for the analysis of data areal data, with a focus on cluster detection.
* [gwrr](https://cran.r-project.org/web/packages/gwrr/index.html) - Fits geographically weighted regression (GWR) models and has tools to diagnose and remediate collinearity in the GWR models.
* [lctools](https://cran.r-project.org/web/packages/lctools/index.html) - Package provides researchers and educators with easy-to-learn user friendly tools for calculating key spatial statistics and to apply simple as well as advanced methods of spatial analysis in real data.
* [AMOEBA](https://cran.r-project.org/web/packages/AMOEBA/index.html) - A function to calculate spatial clusters using the Getis-Ord local statistic. It searches irregular clusters (ecotopes) on a map.
* [sparr](https://cran.r-project.org/web/packages/sparr/index.html) - Provides functions to estimate kernel-smoothed spatial and spatio-temporal densities and relative risk functions, and perform subsequent inference.
* [CARBayes](https://cran.r-project.org/web/packages/CARBayes/index.html) - Package implements Bayesian hierarchical spatial areal unit models.
* [glmmBUGS](https://cran.r-project.org/web/packages/glmmBUGS/index.html) - Automates running Generalized Linear Mixed Models, including spatial models, with WinBUGS, OpenBUGS and JAGS.
* [spaMM](https://cran.r-project.org/web/packages/spaMM/index.html) - Inference in mixed-effect models, including generalized linear mixed models with spatial correlations and models with non-Gaussian random effects.
* [PReMiuM](https://cran.r-project.org/web/packages/PReMiuM/index.html) - Dirichlet Process Bayesian Clustering, Profile Regression.
* [spacom](https://cran.r-project.org/web/packages/spacom/index.html) - Provides tools to construct and exploit spatially weighted context data.
* [geospacom](https://cran.r-project.org/web/packages/geospacom/index.html) - Generates distance matrices from shape files and represents spatially weighted multilevel analysis results.
* [spatsurv](https://cran.r-project.org/web/packages/spatsurv/index.html) - Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models.
* [spBayesSurv](https://cran.r-project.org/web/packages/spBayesSurv/index.html) - Bayesian Modeling and Analysis of Spatially Correlated Survival Data.
* [spselect](https://cran.r-project.org/web/packages/spselect/index.html) - Fits spatial scale (SS) forward stepwise regression, SS incremental forward stagewise regression, SS least angle regression (LARS), and SS lasso models.
* [nlme](https://cran.r-project.org/web/packages/nlme/index.html) - Fit and compare Gaussian linear and nonlinear mixed-effects models.
* [spatcounts](https://cran.r-project.org/web/packages/spatcounts/index.html) - Fit spatial CAR count regression models using MCMC.
* [McSpatial](https://cran.r-project.org/web/packages/McSpatial/index.html) - Provides functions for locally weighted regression, semiparametric and conditionally parametric regression, fourier and cubic spline functions, GMM and linearized spatial logit and probit, k-density functions and counterfactuals, nonparametric quantile regression and conditional density functions, Machado-Mata decomposition for quantile regressions, spatial AR model, repeat sales models, and conditionally parametric logit and probit.
* [splm](https://cran.r-project.org/web/packages/splm/index.html) - ML and GM estimation and diagnostic testing of econometric models for spatial panel data.
* [S2sls](https://cran.r-project.org/web/packages/S2sls/index.html) - Fit a spatial instrumental-variable regression by two-stage least squares.
* [spanel](https://cran.r-project.org/web/packages/spanel/index.html) - Fit the spatial panel data models: the fixed effects, random effects and between models.
* [HSAR](https://cran.r-project.org/web/packages/HSAR/index.html) - A library of the Hierarchical Spatial Autoregressive Model (HSAR), based on a Bayesian Markov Chain Monte Carlo (MCMC) algorithm.
* [spatialprobit](https://cran.r-project.org/web/packages/spatialprobit/index.html) - Bayesian Estimation of Spatial Probit and Tobit Models.
* [ProbitSpatial](https://cran.r-project.org/web/packages/ProbitSpatial/index.html) - Binomial Spatial Probit models for big data.
* [starma](https://cran.r-project.org/web/packages/starma/index.html) - Statistical functions to identify, estimate and diagnose a Space-Time AutoRegressive Moving Average (STARMA) model.
* [ade4](https://cran.r-project.org/web/packages/ade4/index.html) - Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis).
* [adehabitat](https://cran.r-project.org/web/packages/adehabitat/index.html) - A collection of tools for the analysis of habitat selection by animals.
* [adehabitatHR](https://cran.r-project.org/web/packages/adehabitatHR/index.html) - A collection of tools for the estimation of animals home range.
* [adehabitatHS](https://cran.r-project.org/web/packages/adehabitatHS/index.html) - A collection of tools for the analysis of habitat selection.
* [adehabitatLT](https://cran.r-project.org/web/packages/adehabitatLT/index.html) - A collection of tools for the analysis of animal movements.
* [adehabitatMA](https://cran.r-project.org/web/packages/adehabitatMA/index.html) - A collection of tools to deal with raster maps.
* [pastecs](https://cran.r-project.org/web/packages/pastecs/index.html) - Regulation, decomposition and analysis of space-time series.
* [vegan](https://cran.r-project.org/web/packages/vegan/index.html) - Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
* [tripEstimation](https://cran.r-project.org/web/packages/tripEstimation/index.html) - Data handling and estimation functions for animal movement estimation from archival or satellite tags.
* [spind](https://cran.r-project.org/web/packages/spind/index.html) - Functions for spatial methods based on generalized estimating equations (GEE) and wavelet-revised methods (WRM), functions for scaling by wavelet multiresolution regression (WMRR), conducting multi-model inference, and stepwise model selection.
* [rangeMapper](https://cran.r-project.org/web/packages/rangeMapper/index.html) - Tools for easy generation of (life-history) traits maps based on species range (extent-of-occurrence) maps.
* [siplab](https://cran.r-project.org/web/packages/siplab/index.html) - A platform for experimenting with spatially explicit individual-based vegetation models.
* [ModelMap](https://cran.r-project.org/web/packages/ModelMap/index.html) - Creates sophisticated models of training data and validates the models with an independent test set, cross validation, or in the case of Random Forest Models, with Out Of Bag (OOB) predictions on the training data.
* [SpatialPosition](https://cran.r-project.org/web/packages/SpatialPosition/index.html) - Computes spatial position models: Stewart potentials, Reilly catchment areas, Huff catchment areas.
* [Watersheds](https://cran.r-project.org/web/packages/Watersheds/index.html) - Methods for watersheds aggregation and spatial drainage network analysis.
* [Rcitrus](http://www.leg.ufpr.br/Rcitrus/) - Spatial analysis of plant disease incidence.
* [ngspatial](https://cran.r-project.org/web/packages/ngspatial/index.html) - Provides tools for analyzing spatial data, especially non- Gaussian areal data.
* [bfastSpatial](https://github.com/loicdtx/bfastSpatial) - Package to pre-process gridded time-series data in order for them to be analyzed with change detection algorithms such as bfast. Uses classes from the raster package and includes utilities to run the algorithms and post-process the results.
* [teamlucc](https://github.com/azvoleff/teamlucc) - Is designed to facilitate analysis of land use and cover change (LUCC) around the monitoring sites of the Tropical Ecology Assessment and Monitoring (TEAM) Network.
## JavaScript
* [Heatmap.js](https://www.patrick-wied.at/static/heatmapjs/) - A heatmap implementation for Javascript.