diff --git a/synapse/storage/schema/delta/56/fix_room_keys_index.sql b/synapse/storage/schema/delta/56/fix_room_keys_index.sql
new file mode 100644
index 000000000..014cb3b53
--- /dev/null
+++ b/synapse/storage/schema/delta/56/fix_room_keys_index.sql
@@ -0,0 +1,18 @@
+/* Copyright 2019 Matrix.org Foundation CIC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- version is supposed to be part of the room keys index
+CREATE UNIQUE INDEX e2e_room_keys_with_version_idx ON e2e_room_keys(user_id, version, room_id, session_id);
+DROP INDEX IF EXISTS e2e_room_keys_idx;