bg update to clear out duplicate outbound_device_list_pokes (#7193)

We seem to have some duplicates, which could do with being cleared out.

changelog.d/7193.misc

@@ -0,0 +1 @@
+Add a background database update job to clear out duplicate `device_lists_outbound_pokes`.

synapse/storage/data_stores/main/client_ips.py

@@ -21,7 +21,7 @@ from twisted.internet import defer
 
 from synapse.metrics.background_process_metrics import wrap_as_background_process
 from synapse.storage._base import SQLBaseStore
-from synapse.storage.database import Database
+from synapse.storage.database import Database, make_tuple_comparison_clause
 from synapse.util.caches import CACHE_SIZE_FACTOR
 from synapse.util.caches.descriptors import Cache
 
@@ -303,16 +303,10 @@ class ClientIpBackgroundUpdateStore(SQLBaseStore):
             #      we'll just end up updating the same device row multiple
             #      times, which is fine.
 
-            if self.database_engine.supports_tuple_comparison:
-                where_clause = "(user_id, device_id) > (?, ?)"
-                where_args = [last_user_id, last_device_id]
-            else:
-                # We explicitly do a `user_id >= ? AND (...)` here to ensure
-                # that an index is used, as doing `user_id > ? OR (user_id = ? AND ...)`
-                # makes it hard for query optimiser to tell that it can use the
-                # index on user_id
-                where_clause = "user_id >= ? AND (user_id > ? OR device_id > ?)"
-                where_args = [last_user_id, last_user_id, last_device_id]
+            where_clause, where_args = make_tuple_comparison_clause(
+                self.database_engine,
+                [("user_id", last_user_id), ("device_id", last_device_id)],
+            )
 
             sql = """
                 SELECT

synapse/storage/data_stores/main/devices.py

@@ -32,7 +32,11 @@ from synapse.logging.opentracing import (
 )
 from synapse.metrics.background_process_metrics import run_as_background_process
 from synapse.storage._base import SQLBaseStore, db_to_json, make_in_list_sql_clause
-from synapse.storage.database import Database, LoggingTransaction
+from synapse.storage.database import (
+    Database,
+    LoggingTransaction,
+    make_tuple_comparison_clause,
+)
 from synapse.types import Collection, get_verify_key_from_cross_signing_key
 from synapse.util.caches.descriptors import (
     Cache,
@@ -49,6 +53,8 @@ DROP_DEVICE_LIST_STREAMS_NON_UNIQUE_INDEXES = (
     "drop_device_list_streams_non_unique_indexes"
 )
 
+BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES = "remove_dup_outbound_pokes"
+
 
 class DeviceWorkerStore(SQLBaseStore):
     def get_device(self, user_id, device_id):
@@ -714,6 +720,11 @@ class DeviceBackgroundUpdateStore(SQLBaseStore):
             self._drop_device_list_streams_non_unique_indexes,
         )
 
+        # clear out duplicate device list outbound pokes
+        self.db.updates.register_background_update_handler(
+            BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES, self._remove_duplicate_outbound_pokes,
+        )
+
     @defer.inlineCallbacks
     def _drop_device_list_streams_non_unique_indexes(self, progress, batch_size):
         def f(conn):
@@ -728,6 +739,66 @@ class DeviceBackgroundUpdateStore(SQLBaseStore):
         )
         return 1
 
+    async def _remove_duplicate_outbound_pokes(self, progress, batch_size):
+        # for some reason, we have accumulated duplicate entries in
+        # device_lists_outbound_pokes, which makes prune_outbound_device_list_pokes less
+        # efficient.
+        #
+        # For each duplicate, we delete all the existing rows and put one back.
+
+        KEY_COLS = ["stream_id", "destination", "user_id", "device_id"]
+        last_row = progress.get(
+            "last_row",
+            {"stream_id": 0, "destination": "", "user_id": "", "device_id": ""},
+        )
+
+        def _txn(txn):
+            clause, args = make_tuple_comparison_clause(
+                self.db.engine, [(x, last_row[x]) for x in KEY_COLS]
+            )
+            sql = """
+                SELECT stream_id, destination, user_id, device_id, MAX(ts) AS ts
+                FROM device_lists_outbound_pokes
+                WHERE %s
+                GROUP BY %s
+                HAVING count(*) > 1
+                ORDER BY %s
+                LIMIT ?
+                """ % (
+                clause,  # WHERE
+                ",".join(KEY_COLS),  # GROUP BY
+                ",".join(KEY_COLS),  # ORDER BY
+            )
+            txn.execute(sql, args + [batch_size])
+            rows = self.db.cursor_to_dict(txn)
+
+            row = None
+            for row in rows:
+                self.db.simple_delete_txn(
+                    txn, "device_lists_outbound_pokes", {x: row[x] for x in KEY_COLS},
+                )
+
+                row["sent"] = False
+                self.db.simple_insert_txn(
+                    txn, "device_lists_outbound_pokes", row,
+                )
+
+            if row:
+                self.db.updates._background_update_progress_txn(
+                    txn, BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES, {"last_row": row},
+                )
+
+            return len(rows)
+
+        rows = await self.db.runInteraction(BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES, _txn)
+
+        if not rows:
+            await self.db.updates._end_background_update(
+                BG_UPDATE_REMOVE_DUP_OUTBOUND_POKES
+            )
+
+        return rows
+
 
 class DeviceStore(DeviceWorkerStore, DeviceBackgroundUpdateStore):
     def __init__(self, database: Database, db_conn, hs):

synapse/storage/data_stores/main/schema/delta/58/02remove_dup_outbound_pokes.sql

@@ -0,0 +1,22 @@
+/* Copyright 2020 The Matrix.org Foundation C.I.C
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+ /* for some reason, we have accumulated duplicate entries in
+  * device_lists_outbound_pokes, which makes prune_outbound_device_list_pokes less
+  * efficient.
+  */
+
+INSERT INTO background_updates (ordering, update_name, progress_json)
+    VALUES (5800, 'remove_dup_outbound_pokes', '{}');

synapse/storage/database.py

@@ -17,7 +17,17 @@
 import logging
 import time
 from time import monotonic as monotonic_time
-from typing import Any, Callable, Dict, Iterable, Iterator, List, Optional, Tuple
+from typing import (
+    Any,
+    Callable,
+    Dict,
+    Iterable,
+    Iterator,
+    List,
+    Optional,
+    Tuple,
+    TypeVar,
+)
 
 from six import iteritems, iterkeys, itervalues
 from six.moves import intern, range
@@ -1557,3 +1567,74 @@ def make_in_list_sql_clause(
         return "%s = ANY(?)" % (column,), [list(iterable)]
     else:
         return "%s IN (%s)" % (column, ",".join("?" for _ in iterable)), list(iterable)
+
+
+KV = TypeVar("KV")
+
+
+def make_tuple_comparison_clause(
+    database_engine: BaseDatabaseEngine, keys: List[Tuple[str, KV]]
+) -> Tuple[str, List[KV]]:
+    """Returns a tuple comparison SQL clause
+
+    Depending what the SQL engine supports, builds a SQL clause that looks like either
+    "(a, b) > (?, ?)", or "(a > ?) OR (a == ? AND b > ?)".
+
+    Args:
+        database_engine
+        keys: A set of (column, value) pairs to be compared.
+
+    Returns:
+        A tuple of SQL query and the args
+    """
+    if database_engine.supports_tuple_comparison:
+        return (
+            "(%s) > (%s)" % (",".join(k[0] for k in keys), ",".join("?" for _ in keys)),
+            [k[1] for k in keys],
+        )
+
+    # we want to build a clause
+    #    (a > ?) OR
+    #    (a == ? AND b > ?) OR
+    #    (a == ? AND b == ? AND c > ?)
+    #    ...
+    #    (a == ? AND b == ? AND ... AND z > ?)
+    #
+    # or, equivalently:
+    #
+    #  (a > ? OR (a == ? AND
+    #    (b > ? OR (b == ? AND
+    #      ...
+    #        (y > ? OR (y == ? AND
+    #          z > ?
+    #        ))
+    #      ...
+    #    ))
+    #  ))
+    #
+    # which itself is equivalent to (and apparently easier for the query optimiser):
+    #
+    #  (a >= ? AND (a > ? OR
+    #    (b >= ? AND (b > ? OR
+    #      ...
+    #        (y >= ? AND (y > ? OR
+    #          z > ?
+    #        ))
+    #      ...
+    #    ))
+    #  ))
+    #
+    #
+
+    clause = ""
+    args = []  # type: List[KV]
+    for k, v in keys[:-1]:
+        clause = clause + "(%s >= ? AND (%s > ? OR " % (k, k)
+        args.extend([v, v])
+
+    (k, v) = keys[-1]
+    clause += "%s > ?" % (k,)
+    args.append(v)
+
+    clause += "))" * (len(keys) - 1)
+    return clause, args

tests/storage/test_database.py

@@ -0,0 +1,52 @@
+# -*- coding: utf-8 -*-
+# Copyright 2020 The Matrix.org Foundation C.I.C.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+from synapse.storage.database import make_tuple_comparison_clause
+from synapse.storage.engines import BaseDatabaseEngine
+
+from tests import unittest
+
+
+def _stub_db_engine(**kwargs) -> BaseDatabaseEngine:
+    # returns a DatabaseEngine, circumventing the abc mechanism
+    # any kwargs are set as attributes on the class before instantiating it
+    t = type(
+        "TestBaseDatabaseEngine",
+        (BaseDatabaseEngine,),
+        dict(BaseDatabaseEngine.__dict__),
+    )
+    # defeat the abc mechanism
+    t.__abstractmethods__ = set()
+    for k, v in kwargs.items():
+        setattr(t, k, v)
+    return t(None, None)
+
+
+class TupleComparisonClauseTestCase(unittest.TestCase):
+    def test_native_tuple_comparison(self):
+        db_engine = _stub_db_engine(supports_tuple_comparison=True)
+        clause, args = make_tuple_comparison_clause(db_engine, [("a", 1), ("b", 2)])
+        self.assertEqual(clause, "(a,b) > (?,?)")
+        self.assertEqual(args, [1, 2])
+
+    def test_emulated_tuple_comparison(self):
+        db_engine = _stub_db_engine(supports_tuple_comparison=False)
+        clause, args = make_tuple_comparison_clause(
+            db_engine, [("a", 1), ("b", 2), ("c", 3)]
+        )
+        self.assertEqual(
+            clause, "(a >= ? AND (a > ? OR (b >= ? AND (b > ? OR c > ?))))"
+        )
+        self.assertEqual(args, [1, 1, 2, 2, 3])