import spacy
from collections import Counter
import re as regex
import os
from saxonche import PySaxonProcessor


#### Loads all of the necessary variables and functions.
#nlp = spacy.cli.download("en_core_web_lg")
nlp = spacy.load("en_core_web_lg")
#########################################################################################
# ebb: After reading the NLP output, we know spaCy is making some mistakes.
# So, here let's try adding an EntityRuler to customize spaCy's classification. We need
# to configure this BEFORE we send the tokens off to nlp() for processing.
##########################################################################################
# Create the EntityRuler and set it so the ner comes after, so OUR rules take precedence
# Sources:
#   W. J. B. Mattingly: https://ner.pythonhumanities.com/02_01_spaCy_Entity_Ruler.html
#   spaCy documentation on NER Entity Ruler: https://spacy.io/usage/rule-based-matching#entityruler
config = {"spans_key": None, "annotate_ents": True, "overwrite": True, "validate": True}
ruler = nlp.add_pipe("span_ruler", before="ner",  config=config)
# 2023-04-07: ebb: NOTE: before="ner" setting seems to allow the spaCy NER rules to prevail over these patterns where
# there is a conflict.
# after="ner" means that the spaCy NER is TOTALLY OVERWRITTEN and invalidated by our patterns.

# Notes: Mattingly has this: ruler = nlp.add_pipe("entity_ruler", after="ner", config={"validate": True})
# But this only works when spaCy doesn't recognize a word / phrase as a named entity of any kind.
# If it recognizes a named entity but tags it wrong, we correct it with the span_ruler, not the entity_ruler
patterns = [
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "^-\w+?"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "^.$"}}]},
    # ebb: Don't match on any single characters!
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "\^+"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "^\w\w$"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "^[a-z]+\s+[a-z]+$"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "^.*?__{2,}.*?$"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "CHRISTIAN(ITY|DOM)?"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "CHRISTIAN\s+NETWORK"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "Catholic(ism)?"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "[A-Z]{2,}[A-Z][a-z]+"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "[a-z]{2,}[A-Z][a-z]+"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "^.*?[a-z][A-Z].*?$"}}]},
    # ebb: Above line attempts to stop matching things like Oak IslandThe Method
    {"label": "NULL", "pattern": [{"TEXT" : {"REGEX": "^[Mm\-]+$"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "\w+cia\w+"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "fed\w+"}}]},
    # SOCIALISMBY RICHARD
    # ebb: Above line attempts to stop matching things Mmm-mm or mm , etc.
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "TITIOUS CONCEPTS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "TORTIOUS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "THROUGHWAYS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "TARGET"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "NULL"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Sympathisers"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Sympathy"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "UNTIL"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "UNCLE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "VCI"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "VISUALIZATION"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "YOGA"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "ack Canfield"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "aurem concepisti"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Xref"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Wspomnienia"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Untrustworthy"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Twelve Apostles"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Tsar"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Treasurer"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Thunderer"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Thou raisest"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Thou cleansest"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Thou castest"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "This Leopold the Traitor"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Swore"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Swastika"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Superstrings"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Subj"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Subterrene"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Sts"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Strength"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Sol Deus Invictus"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Skis"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Sect"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Sen"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Senza Aristotele noi"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Salubrious Living"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Saint vouches"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Safehaven"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SURPRISED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SURE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SUCCESSIVE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SUBSEQUENT"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "STUNTS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "STREAMLINED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SPECULATION"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SPECULA"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SOVEREIGN"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SHOCKED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SEPT"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "SAVIOR"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Roman Emperor"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Revelation"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Resurrection Bone"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Relearning"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Reason"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Read again Knocking the Key Weapon"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Rea"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "RESOLVE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "RESALE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "REBELS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "RATIFICATION"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Qui"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Priest"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Price"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Popes"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Place"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Philosophizing"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Pharmacopaeia"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Pharaoh"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Pauline Privilege"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Paul the Persecutor"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Page"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Pagan Fathers"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "PWs"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "PROPAGANDA"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "PRIVILEGES"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "PRIOR RESTRAINT"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "PRINCE satropic"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "PRESERVATION"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "POPE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer Brandt"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer Eichmann"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer Liebehenschel"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer Rauff"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer Rodl"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer Sievers"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Obersturmbannfuehrer Walter Rauff"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "OPIUM CULTIVATION"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Nutshell"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Numberless"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Num"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Northwest"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Northshore"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Northeast"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Ngo Dinh Diem"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Ngo Din Diem"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Nay"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "NAZI CARTEL"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "NATURE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Msgr"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Mother Goose"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Ministerially"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Martial Law Threat"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Marquis Who"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Mapmakers"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Mao"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "MIllbourn"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "MEDLEY"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "MAR"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Lop"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "LYINGLY FOUNDED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Law"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "LAW"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Keys"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "KOD"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Juifs"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Judo"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Joseph the Carpenter"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Jerome arraigns"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Jack Built"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "JUDAICA"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "JURIS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "JOINT"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "JHVH"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "JESUS THE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "JESUS DIED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Izvestiya VUZ"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Iron Shins"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Iren"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Infotechnology"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Inerrancy"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Imprimatur"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Imposture"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Implore"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Immortale Dei"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Illuminatus Lanz"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Illiterates Illiterates"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "INTELLECTUALS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "IMMOVABLE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "IMMIGRANT AZIZ Rehman"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "ILLUNINATI USE MAFIAS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Hun"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Hoo boy"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Holy Virginity"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Holy Vehm"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Hoc Signo"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "His Covenant"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Henry the Navigator"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Heathens don"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "auptsturmfuehrer Truehe"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Hauptscharfuehrer Ruebe"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Hamstring Yugo"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "HYPERSPACE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "HUMANE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "HEED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "HEARINGS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Guillotine"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Grupenfuehrer Globocnik"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gruppenfuehrer Katzmann"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Groom"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gregory the Great"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Grammarians"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Grammar"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gospel"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gort"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Goebbelesque"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Godhead"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Girkalinei Comm"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Geschichte der Staatstheorien"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Genus Shamanensis"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Genius"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gene Pool"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gemeter"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gaude Virgo"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gamel Abdul Nasser"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gameplayers"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Galicie Ukrainienne"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Gal"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "GUNJAMMER"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "GUILTY"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "GREED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "GRAMS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "GOVERNORS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "GENIUS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "GAER"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Furness"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Free Inq"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Foxx"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Foo Fighters"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Fig"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Figs"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Feverfew"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Feathers"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Fathers"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "FUNC"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "FOUO"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "FILES KIT"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "FEVERFEW"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "FHK"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Exodus"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Eur"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Epistle clxvi"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Epistle"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Enfranchised"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Endothermic"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Encyc"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Encloged"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Emperor"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Emperor Vespasian"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Electromagnetically"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Ecclesiastici Publici"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Eccles"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Ebrietatis Enconium"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "EXTRAORDINAIRE"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "EXPATRIATION"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "EPISTLES"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "ENORMOUS"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "EMPLOY"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Dupes"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Dueling Spymasters"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Dual Amiga"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Driver"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Dritte Reich"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Drang nach Osten"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Dorman"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Don sez"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Divinatione Daemonorum"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Distinguished paedagogists"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Dies irae"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Die Geschichte von Joel Brand"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Dew"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Deut"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Desert Rat"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Deregulatory Creep"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Der Weg des Politischen Katholizismus"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Depository"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Debasement"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Death Ray"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Das Sogenannte Boese"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "CORRUPT"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "COMMISSIONED THE UNDERSIGNED"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "CLEARFIELD"}}]},
    {"label": "WORK_OF_ART", "pattern": [{"TEXT": {"REGEX": "Pagan Sibylline Oracles"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "CIRCUMSTANTIAL"}}]},
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    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?National\s+?Endowment\s+?for\s+?Democracy"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Congress\s+?for\s+?Cultural\s+?Freedom"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Cambridge\s+?University\s+?Press"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Association\s+?of\s+?National\s+?Security\s+?Alumni"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Avon\s+?Books"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?American\s+?Psychiatric\s+?Association"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Ministry\s+?of\s+?Defence"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Ramparts\s+?Press"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Grove\s+?Press"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?National\s+?Association\s+?of\s+?Scholars"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Council\s+?on\s+?Foreign\s+?Relations"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Symbionese\s+?Liberation\s+?Army"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Washington\s+?Post"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Internal\s+?Revenue\s+?Service"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Terminate\s+?With\s+?Extreme\s+?Prejudice"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Center\s+?for\s+?Strategic\s+?and\s+?International\s+?Studies"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?School\s+?of\s+?Foreign\s+?Service"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?The\s+?Anglo-American\s+?Establishment"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Centre\s+?of\s+?Eternity"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Life\s+?magazine"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Full\s+?Disclosure\s+?Newspaper"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "North\s+American\s+Newspaper\s+Alliance"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Trilateral\s+?Commision"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Ruling\s+?Elite"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?US\s+?Congress"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Church\s+?Committee"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?National\s+?Academy\s+?of\s+?Sciences"}}]},
    {"label": "ORG", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Ramparts"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Bab"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Century"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "The\s+?Problem"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Air\s+?Force\s+?One"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Kingdom\s+?of\s+?God"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Grassy\s+?Knoll"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Frankfurt\s+?airport"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Dealey\s+?Plaza"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Central\s+?Africa"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Fort\s+?Detrick"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Area-51"}}]},
    {"label": "LOC", "pattern": [{"TEXT": {"REGEX": "Clifton\s+?suspension\s+?bridge"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "mandkind"}}]},
    {"label": "NULL", "pattern": [{"TEXT": {"REGEX": "Motor"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "AIDS\s+?virus"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "AIDS"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "AIDS-1"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "AIDS\s+?VIRUS"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Human\s+?Adult\s+?Leukemia\s+?virus"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "LAV"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Malaria"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "ARC"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "HTLV-1"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "HTLV-III"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "HTLV"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "HIV"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "HIV\s+?virus"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Sheep\s+?Visna\s+?Virus"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Pneumocystis\s+?carinii\s+?pneumonia"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Kaposi's\s+?sarcoma"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Smallpox"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Polio"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Gunshot"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "LSD"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Poison"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "MHz"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "TNT"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Acquired\s+?Immuno-Deficiency\s+?Syndrome"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Equal\s+?Opportunity\s+?Employer"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "Visna"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "visna"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "visna\s+?virus"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Korean\s+?War"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "National\s+?Jury\s+?Rights\s+?Day"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Miranda\s+?Case"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "World\s+?War\s+?II"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Second\s+?World\s+?War"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "KRISTALLNACHT"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "First\s+?World\s+?War"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "World\s+?War\s+?I"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Parliament\s+?of\s+?Religions"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "JFK\s+?assassination"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Apollo\s+?14\s+?mission"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Apollo\s+?11"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "([Tt]he\s+?)?Andrew\s+?Cetti\s+?Affair"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Railway\s+?Mania"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "EVENT"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "CHRISTIAN ERA"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "ante-Niccne"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Vietnam\s+?War"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Project\s+?Red-light"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Moon\s+?mission"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "UFO"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Apollo\s+?11"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Johnson's\s+?war\s+?on\s+?poverty"}}]},
    {"label": "MISC", "pattern": [{"TEXT": {"REGEX": "AIDS"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "Chinesse"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "Vietnamese"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "Identified\s+?Alien\s+?Crafts"}}]},
    {"label": "EVENT", "pattern": [{"TEXT": {"REGEX": "IAC"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "multiculturalists"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "Vietnamese"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "Anglo-Saxon"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "Patriots"}}]},
    {"label": "NORP", "pattern": [{"TEXT": {"REGEX": "Patriot"}}]},
]
ruler.add_patterns(patterns)

workingDir = os.getcwd()
CollPath = os.path.join(workingDir, '../pre-src-xml')
outputPath = os.path.join(workingDir, '../src-xml')
# Everything in original conspiracy directory.
insideDir = os.listdir(CollPath)
print(insideDir)

# Copies files in case they do not exist
def copyTextFiles(file):
    content = []
    # Reads the contents of file, and saves each line of file into the content array.
    with open(CollPath + "/" + file, 'r', encoding='utf8') as inFile:
        for line in inFile:
            content.append(line)
        print(" ~~~~~~~~~~~~~~~~~~~~~~~~~~~ copying " + file + " ~~~~~~~~~~~~~~~~~~~~~~~~~~~ ")
        inFile.close()
    # With the contents copied, a loop will go through the array and write it all in a new file in output folder.
    with open(outputPath + "/" + file, 'w', encoding='utf8') as f:
        for line in content:
            f.write(str(line))

# Function runs through the tokens of given file. Entities are stored in array, then returned. Called by regexFile().
def entitycollector(tokens):
    # creates a new file that includes all of the found entities.
    with open('conspPERSON.txt', 'w') as f:
        entities = {}
        # goes through each entity in the token list.
        for ent in sorted(tokens.ents):
            entityInfo = [ent.text, ent.label_]
            stringify = str(entityInfo)
            f.write(stringify)
            f.write('\n')
            entities[ent.text] = ent.label_
        # return all entities with its label and text.
        return entities

# Function runs regex through given file.
def regexFile(file):
    fileDir = os.path.join(outputPath, file)
    with PySaxonProcessor(license=False) as proc:
        # grabs the original xml file and stores it in a variable for later. this some xquery bs
        xml = open(fileDir, encoding='utf-8').read()
        xp = proc.new_xpath_processor()
        node = proc.parse_xml(xml_text=xml)
        xp.set_context(xdm_item=node)

        # xquery goes through original text, and stores it all in a single string.
        xpath = xp.evaluate('//p ! normalize-space() => string-join()')
        string = str(xpath)

        # regex goes through the text and deletes anything that is not a letter or space.
        cleanedText = regex.sub(r'[^A-z ]+', ' ', string)
        cleanedText = regex.sub(r'\n+', ' ', cleanedText)

        # gets the tokens of the clean text.
        tokens = nlp(cleanedText)

        wrappedText = xml
        # grabs all the entities in file and stores it in a list/array.
        dictEntities = entitycollector(tokens)
        # if anything exists in the list, the following code will run.
        if dictEntities:
            # it will check through each entity in the list and see its entity type. it is looking for "PERSON" tokens
            # in this instance, which includes of nouns and names.
            for entity in dictEntities.keys():
                if dictEntities[entity] == "PERSON" or dictEntities[entity] == "LOC" or dictEntities[entity] == "ORG" or dictEntities[entity] == "GPE" or dictEntities[entity] == "NORP" or dictEntities[entity] == "EVENT":
                    # key_template variable is the elements we wrap around found instances.
                    key_template = "<ent type='" + dictEntities[entity] + "'>" + entity + "</ent>"
                    # loops through wrappedText until all entities are wrapped.
                    wrappedText = wrappedText.replace(entity, key_template)
                    # Saves newly wrapped elements and then writes it into new file.
                    with open(fileDir, 'w', encoding='utf8') as f:
                        f.write(wrappedText)
                        print("WRAPPING " + entity)
                    checkTags(file)
                    # ebb: Added above line to send the tagged file to the checkTags() function for cleaning.

# This part of the code is a WIP.
# ebb: I just activated it, and it works! (Nice job.) I altered it just a bit. May need more regexes to match.
## It tries to find weird or invalid elements/tags and fix them.
def checkTags(file):
    content = []
    fileDir = os.path.join(outputPath, file)

    with open(fileDir, 'r', encoding='utf8') as inFile:
        for line in inFile:
            content.append(line)
    # With the contents copied, a loop will go through the array and write it all in a new file in output folder.
    with open(fileDir, 'w', encoding='utf8') as f:
        for line in content:
            # match = regex.search(r"(<ent type='.+?'>[^<>]*?)<ent[^>]+?>([^<>]+?)</ent>([^<>]*?</ent>)", line)
            # if match:
            # print("broken line found, fixing...")
            # ebb: NOTE: IF this function only processes a line when there's a regex match, we'd have a serious problem:
            # we'd not output the rest of the file--only the cleaned matches. So the output files would be mostly empty!
            # Better to just string-clean every line using regex.sub(). Where there's no regex match, no substitution will happen.
            origLine = line
            # newLine = regex.sub(r"(<ent type='.+?'>[^<>]*?)<ent[^>]+?>([^<>]+?)</ent>([^<>]*?</ent>)", r"\1\2\3",line)
            # <spe<ent type='ORG'>cia</ent>l>
            newLine = regex.sub(r"(</?spe)<ent type='ORG'>(cia)</ent>(l>)", r"\1\2\3", origLine)
            newLine = regex.sub(r"([^>])(New\s+?York\s+?Times)([^<])", r"\1<ent type='ORG'>\2</ent>\3", newLine)
            newLine = regex.sub(r"([^>])(British)([^<])", r"\1<ent type='NORP'>\2</ent>\3", newLine)
            newLine = regex.sub(r"([^>])(New\s+?York(\s+?City)?)([^<])", r"\1<ent type='GPE'>\2</ent>\4", newLine)
            newLine = regex.sub(r"<ent type='[A-z]+?'>(Sundays?)</ent>", r"\1", newLine)
            newLine = regex.sub(r"<ent type='PERSON'>(North)</ent>([a-z]*\s+[A-Z][a-z]+)*", r"<ent type='LOC'>\1\2</ent>", newLine)
            newLine = regex.sub(r"(North\s+o?f?\s*([A-Z][a-z]+\s+)+)", r"<ent type='LOC'>\1</ent>", newLine)

            # newLine = regex.sub(r"(<)<ent type='ORG'>(di)</ent>(v>)", r"\1\2\3", newLine)
            newLine = regex.sub(r"(<ent type='[A-z]+?'>[^<]*?)<ent type='[A-z]+?'>([^<]+?)</ent>([^<]*?</ent>)", r"\1\2\3", newLine)
            newLine = regex.sub(r"(<ent type='[A-z]+?'>[^<]*?)<ent type='[A-z]+?'>([^<]+?)</ent>([^<]*?</ent>)", r"\1\2\3", newLine)
            newLine = regex.sub(r"(<ent type='[A-z]+?'>[^<]*?)<ent type='[A-z]+?'>([^<]+?)</ent>([^<]*?</ent>)", r"\1\2\3", newLine)
            newLine = regex.sub(r"(<ent type='[A-z]+?'>[^<]*?)<ent type='[A-z]+?'>([^<]+?)</ent>([^<]*?</ent>)", r"\1\2\3", newLine)
            newLine = regex.sub(r"(<ent type='[A-z]+?'>[^<]*?)<ent type='[A-z]+?'>([^<]+?)</ent>([^<]*?</ent>)", r"\1\2\3", newLine)
            newLine = regex.sub(r"(<ent type='[A-z]+?'>[^<]*?)<ent type='[A-z]+?'>([^<]+?)</ent>([^<]*?</ent>)", r"\1\2\3", newLine)
            # ebb: I'm repeating the above just in case of the weird event of triple or quadruple nested <ent> tags in <ent> tags.
            # We saw it happen on the LOTR project and running it through multiple passes of the above line ultimately got rid of them all
            # preserving only the outermost tags.
            newLine = regex.sub(r"(<ent type=')<ent type='ORG'>(ORG)</ent>('>)", r"\1\2\3", newLine)
            newLine = regex.sub(r"(<ent type='[A-Z]+'>)<ent type='[A-Z]+'>(\w+)</ent><ent type='[A-Z]+'>(\w+)</ent>(</ent>)", "\1\2 \3\4", newLine)
            newLine = regex.sub(r"(<ent type='[A-Z]+?'>)(\w+)\s+?(<ent type='[A-Z+?]'>)(\w+)(</ent>)(\w+)(<ent type='[A-Z]+?'>)(\w+)(</ent>)(</ent>)", r"\1\2 \4 \6 \8\9", newLine)
            # ebb: Problem line below: eliminates <ent type="PERSON">John Kennedy</ent>'s
            # newLine = regex.sub(r"<ent type='\w+'>(\w+)</ent>('\w)", r"\1\2", newLine)
#
# <spe<ent type='ORG'>cia</ent>l>
# <<ent type='ORG'>di</ent>v>
            if origLine != newLine:
                print("broken line found, fixing...")
                print(origLine + "\n INTO.")
                print(newLine)
            f.write(str(newLine))
    print("File checking finished.")

for file in insideDir:
    copyTextFiles(file)
    regexFile(file)
    #checkTags(file)
    # ebb: You don't really want to activate checkTags here,
    # because it would run over the untagged input files.