Reorganize and update CLI tool references pages for 4.0

Requested by: QubesOS/qubes-issues#3495
Requests:     QubesOS/qubes-issues#3538

reference/tools/3.2/domU/qvm-copy-to-vm.md

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+---
+layout: doc
+title: qvm-copy-to-vm
+permalink: /doc/tools/3.2/domU/qvm-copy-to-vm/
+redirect_from:
+- /doc/vm-tools/qvm-copy-to-vm/
+- /en/doc/vm-tools/qvm-copy-to-vm/
+- /doc/VmTools/QvmCopyToVm/
+- /wiki/VmTools/QvmCopyToVm/
+---
+
+qvm-copy-to-vm
+==============
+
+NAME
+----
+
+qvm-copy-to-vm - copy specified files to specified destination VM
+
+Date  
+2012-05-30
+
+SYNOPSIS
+--------
+
+qvm-copy-to-vm [--without-progress] dest\_vmname file [file]+
+
+OPTIONS
+-------
+
+--without-progress  
+Don't display progress info
+
+AUTHORS
+-------
+
+Joanna Rutkowska \<joanna at invisiblethingslab dot com\>
+Rafal Wojtczuk \<rafal at invisiblethingslab dot com\>
+Marek Marczykowski \<marmarek at invisiblethingslab dot com\>

reference/tools/3.2/domU/qvm-open-in-dvm.md

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+---
+layout: doc
+title: qvm-open-in-dvm
+permalink: /doc/tools/3.2/domU/qvm-open-in-dvm/
+redirect_from:
+- /doc/vm-tools/qvm-open-in-dvm/
+- /en/doc/vm-tools/qvm-open-in-dvm/
+- /doc/VmTools/QvmOpenInDvm/
+- /wiki/VmTools/QvmOpenInDvm/
+---
+
+qvm-open-in-dvm
+===============
+
+NAME
+----
+
+qvm-open-in-dvm - open a specified file in disposable VM
+
+Date  
+2012-05-30
+
+SYNOPSIS
+--------
+
+qvm-open-in-dvm filename
+
+OPTIONS
+-------
+
+AUTHORS
+-------
+
+Joanna Rutkowska \<joanna at invisiblethingslab dot com\>
+Rafal Wojtczuk \<rafal at invisiblethingslab dot com\>
+Marek Marczykowski \<marmarek at invisiblethingslab dot com\>

reference/tools/3.2/domU/qvm-open-in-vm.md

@@ -0,0 +1,36 @@
+---
+layout: doc
+title: qvm-open-in-vm
+permalink: /doc/tools/3.2/domU/qvm-open-in-vm/
+redirect_from:
+- /doc/vm-tools/qvm-open-in-vm/
+- /en/doc/vm-tools/qvm-open-in-vm/
+- /doc/VmTools/QvmOpenInVm/
+- /wiki/VmTools/QvmOpenInVm/
+---
+
+qvm-open-in-vm
+==============
+
+NAME
+----
+
+qvm-open-in-vm - open a specified file in other VM
+
+Date  
+2012-05-30
+
+SYNOPSIS
+--------
+
+qvm-open-in-vm vmname filename
+
+OPTIONS
+-------
+
+AUTHORS
+-------
+
+Joanna Rutkowska \<joanna at invisiblethingslab dot com\>
+Rafal Wojtczuk \<rafal at invisiblethingslab dot com\>
+Marek Marczykowski \<marmarek at invisiblethingslab dot com\>

reference/tools/3.2/domU/qvm-run.md

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+---
+layout: doc
+title: qvm-run
+permalink: /doc/tools/3.2/domU/qvm-run/
+redirect_from:
+- /doc/vm-tools/qvm-run/
+- /en/doc/vm-tools/qvm-run/
+- /doc/VmTools/QvmRun/
+- /wiki/VmTools/QvmRun/
+---
+
+qvm-run
+=======
+
+NAME
+----
+
+qvm-run - run a specified command in a specified VM
+
+Date  
+2012-05-30
+
+SYNOPSIS
+--------
+
+qvm-run vmname command [arguments]
+
+OPTIONS
+-------
+
+--dispvm  
+Pass this option instead of vmname to start new DisposableVM
+
+AUTHORS
+-------
+
+Joanna Rutkowska \<joanna at invisiblethingslab dot com\>
+Rafal Wojtczuk \<rafal at invisiblethingslab dot com\>
+Marek Marczykowski \<marmarek at invisiblethingslab dot com\>