Reorganize and update CLI tool references pages for 4.0

Requested by: QubesOS/qubes-issues#3495
Requests:     QubesOS/qubes-issues#3538

reference/tools/3.2/dom0/qvm-run.md

@@ -0,0 +1,78 @@
+---
+layout: doc
+title: qvm-run
+permalink: /doc/tools/3.2/dom0/qvm-run/
+redirect_from:
+- /doc/dom0-tools/qvm-run/
+- /en/doc/dom0-tools/qvm-run/
+- /doc/Dom0Tools/QvmRun/
+- /wiki/Dom0Tools/QvmRun/
+---
+
+qvm-run
+=======
+
+NAME
+----
+
+qvm-run - run a command on a specified VM
+
+Date  
+2012-04-11
+
+SYNOPSIS
+--------
+
+qvm-run [options] [\<vm-name\>] [\<cmd\>]
+
+OPTIONS
+-------
+
+-h, --help  
+Show this help message and exit
+
+-q, --quiet  
+Be quiet
+
+-a, --auto  
+Auto start the VM if not running
+
+-u USER, --user=USER  
+Run command in a VM as a specified user
+
+--tray  
+Use tray notifications instead of stdout
+
+--all  
+Run command on all currently running VMs (or all paused, in case of --unpause)
+
+--exclude=EXCLUDE\_LIST  
+When --all is used: exclude this VM name (might be repeated)
+
+--wait  
+Wait for the VM(s) to shutdown
+
+--shutdown  
+(deprecated) Do 'xl shutdown' for the VM(s) (can be combined this with --all and --wait)
+
+--pause  
+Do 'xl pause' for the VM(s) (can be combined this with --all and --wait)
+
+--unpause  
+Do 'xl unpause' for the VM(s) (can be combined this with --all and --wait)
+
+-p, --pass-io  
+Pass stdin/stdout/stderr from remote program
+
+--localcmd=LOCALCMD  
+With --pass-io, pass stdin/stdout/stderr to the given program
+
+--force  
+Force operation, even if may damage other VMs (eg. shutdown of NetVM)
+
+AUTHORS
+-------
+
+Joanna Rutkowska \<joanna at invisiblethingslab dot com\>
+Rafal Wojtczuk \<rafal at invisiblethingslab dot com\>
+Marek Marczykowski \<marmarek at invisiblethingslab dot com\>