# this script iterates through zst compressed ndjson files, like the pushshift reddit dumps, loads each line # and if it matches the criteria in the command line arguments, it's written out into a separate file for # that month. After all the ndjson files are processed, it iterates through the resulting files and combines # them into a final file. # this script assumes the files are named in chronological order and prefixed with RS_ or RC_, like the pushshift dumps # features: # - multiple processes in parallel to maximize drive read and decompression # - saves state as it completes each file and picks up where it stopped # - detailed progress indicators # examples: # - get all comments that have a subreddit field (subreddit is the default) of "wallstreetbets". This will create a single output file "wallstreetbets_comments.zst" in the folder the script is run in # python3 combine_folder_multiprocess.py reddit/comments --value wallstreetbets # - get all comments and submissions (assuming both types of dump files are under the reddit folder) that have an author field of Watchful1 or spez and output the results to a folder called pushshift. # This will result in four files, pushshift/Watchful1_comments, pushshift/Watchful1_submissions, pushshift/spez_comments, pushshift/spez_submissions # python3 combine_folder_multiprocess.py reddit --field author --value Watchful1,spez --output pushshift import zstandard import os import json import sys import time import argparse import re from collections import defaultdict import logging.handlers import multiprocessing from enum import Enum # sets up logging to the console as well as a file log = logging.getLogger("bot") log.setLevel(logging.INFO) log_formatter = logging.Formatter('%(asctime)s - %(levelname)s: %(message)s') log_str_handler = logging.StreamHandler() log_str_handler.setFormatter(log_formatter) log.addHandler(log_str_handler) if not os.path.exists("logs"): os.makedirs("logs") log_file_handler = logging.handlers.RotatingFileHandler( os.path.join("logs", "bot.log"), maxBytes=1024*1024*16, backupCount=5) log_file_handler.setFormatter(log_formatter) log.addHandler(log_file_handler) # convenience object used to pass status information between processes class FileConfig: def __init__(self, input_path, output_path, complete=False, uncompressed_size=None, new_compressed_size=None, total_lines=None): self.input_path = input_path self.output_path = output_path self.complete = complete self.error_message = None self.old_compressed_size = os.stat(input_path).st_size self.uncompressed_size = uncompressed_size self.new_compressed_size = new_compressed_size self.total_lines = total_lines def __str__(self): return f"{self.input_path} : {self.output_path} : {self.complete} : {self.old_compressed_size} - {self.uncompressed_size} - {self.new_compressed_size}" def read_and_decode(reader, chunk_size, max_window_size, previous_chunk=None, bytes_read=0): chunk = reader.read(chunk_size) bytes_read += len(chunk) if previous_chunk is not None: chunk = previous_chunk + chunk try: return chunk.decode(), bytes_read except UnicodeDecodeError: if bytes_read > max_window_size: raise UnicodeError(f"Unable to decode frame after reading {bytes_read:,} bytes") return read_and_decode(reader, chunk_size, max_window_size, chunk, bytes_read) def count_lines_bytes(file_name): count_lines = 0 uncompressed_bytes = 0 with open(file_name, 'rb') as file_handle: buffer = '' reader = zstandard.ZstdDecompressor(max_window_size=2**31).stream_reader(file_handle) while True: chunk, chunk_bytes = read_and_decode(reader, 2**27, (2**29) * 2) uncompressed_bytes += chunk_bytes if not chunk: break lines = (buffer + chunk).split("\n") count_lines += len(lines) - 1 buffer = lines[-1] reader.close() return count_lines, uncompressed_bytes class Queue: def __init__(self, max_size): self.list = [] self.max_size = max_size def put(self, item): if len(self.list) >= self.max_size: self.list.pop(0) self.list.append(item) def peek(self): return self.list[0] if len(self.list) > 0 else None # save file information and progress to a json file # we don't want to save the whole FileConfig object, since some info resets if we restart def save_file_list(input_files, working_folder, status_json, arg_string, script_type): if not os.path.exists(working_folder): os.makedirs(working_folder) simple_file_list = [] for file in input_files: simple_file_list.append([file.input_path, file.output_path, file.complete, file.uncompressed_size, file.new_compressed_size, file.total_lines]) with open(status_json, 'w') as status_json_file: output_dict = { "args": arg_string, "type": script_type, "files": simple_file_list, } status_json_file.write(json.dumps(output_dict, indent=4)) # load file information from the json file and recalculate file sizes def load_file_list(status_json): if os.path.exists(status_json): with open(status_json, 'r') as status_json_file: output_dict = json.load(status_json_file) input_files = [] for simple_file in output_dict["files"]: input_files.append( FileConfig(simple_file[0], simple_file[1], simple_file[2], simple_file[3], simple_file[4], simple_file[5]) ) return input_files, output_dict["args"], output_dict["type"] else: return None, None, None # base of each separate process. Loads a file, iterates through lines and writes out # the ones where the `field` of the object matches `value`. Also passes status # information back to the parent via a queue def process_file(file, queue, threads, level): queue.put(file) file.total_lines, file.uncompressed_size = count_lines_bytes(file.input_path) queue.put(file) try: decompressor = zstandard.ZstdDecompressor(max_window_size=2**31) compressor = zstandard.ZstdCompressor(level=level, write_content_size=True, write_checksum=True, threads=threads) with open(file.input_path, 'rb') as input_handle, open(file.output_path, "wb") as output_handle: compression_reader = decompressor.stream_reader(input_handle) read_count, file.new_compressed_size = compressor.copy_stream(compression_reader, output_handle, size=file.uncompressed_size) file.complete = True except Exception as err: file.error_message = str(err) #log.info(f"{read_count:,} to {write_count:,} in {seconds:,.2f} with {threads} threads") queue.put(file) if __name__ == '__main__': parser = argparse.ArgumentParser(description="Use multiple processes to recompress zst files in a folder") parser.add_argument("input", help="The input folder to read files from") parser.add_argument("output", help="Put the output files in this folder") parser.add_argument("--level", help="The compression ratio to output at. From 0 to 22", default=22, type=int) parser.add_argument("--working", help="The folder to store temporary files in", default="pushshift_working") parser.add_argument("--processes", help="Number of processes to use", default=4, type=int) parser.add_argument("--threads", help="Number of threads per process", default=0, type=int) parser.add_argument("--debug", help="Enable debug logging", action='store_const', const=True, default=False) script_type = "compress" args = parser.parse_args() arg_string = f"{args.input}:{args.output}:{args.level}" if args.debug: log.setLevel(logging.DEBUG) log.info(f"Loading files from: {args.input}") log.info(f"Writing output to: {args.output}") multiprocessing.set_start_method('spawn') queue = multiprocessing.Manager().Queue() status_json = os.path.join(args.working, "status.json") input_files, saved_arg_string, saved_type = load_file_list(status_json) if saved_arg_string and saved_arg_string != arg_string: log.warning(f"Args don't match args from json file. Delete working folder") sys.exit(0) if saved_type and saved_type != script_type: log.warning(f"Script type doesn't match type from json file. Delete working folder") sys.exit(0) # if the file list wasn't loaded from the json, this is the first run, find what files we need to process if input_files is None: input_files = [] for file_name in os.listdir(args.input): input_path = os.path.join(args.input, file_name) if os.path.isfile(input_path) and file_name.endswith(".zst"): output_path = os.path.join(args.output, file_name) input_files.append(FileConfig(input_path, output_path=output_path)) save_file_list(input_files, args.working, status_json, arg_string, script_type) else: log.info(f"Existing input file was read, if this is not correct you should delete the {args.working} folder and run this script again") files_processed, total_old_bytes, processed_old_bytes, processed_uncompressed_bytes, processed_new_bytes, processed_lines = 0, 0, 0, 0, 0, 0 files_to_process = [] # calculate the total file size for progress reports, build a list of incomplete files to process # do this largest to smallest by file size so that we aren't processing a few really big files with only a few threads at the end for file in sorted(input_files, key=lambda item: item.old_compressed_size, reverse=True): total_old_bytes += file.old_compressed_size if file.complete: files_processed += 1 processed_old_bytes += file.old_compressed_size processed_uncompressed_bytes += file.uncompressed_size processed_new_bytes += file.new_compressed_size processed_lines += file.total_lines else: files_to_process.append(file) log.info(f"Processed {files_processed} of {len(input_files)} files with {(processed_old_bytes / (2**30)):.2f} of {(total_old_bytes / (2**30)):.2f} gigabytes") start_time = time.time() if len(files_to_process): progress_queue = Queue(40) progress_queue.put([start_time, processed_old_bytes]) speed_queue = Queue(40) # start the workers with multiprocessing.Pool(processes=min(args.processes, len(files_to_process))) as pool: workers = pool.starmap_async(process_file, [(file, queue, args.threads, args.level) for file in files_to_process], chunksize=1, error_callback=log.info) while not workers.ready() or not queue.empty(): # loop until the workers are all done, pulling in status messages as they are sent file_update = queue.get() if file_update.error_message is not None: log.warning(f"File failed {file_update.input_path}: {file_update.error_message}") # this is the workers telling us they are starting a new file, print the debug message but nothing else if not file_update.complete: if file_update.uncompressed_size is not None: log.debug(f"Calculated uncompressed size: {file_update.input_path} : {file_update.uncompressed_size:,}") else: log.debug(f"Starting file: {file_update.input_path} : {file_update.old_compressed_size:,}") continue # I'm going to assume that the list of files is short enough that it's no # big deal to just iterate each time since that saves a bunch of work files_processed, processed_old_bytes, processed_uncompressed_bytes, processed_new_bytes, processed_lines, files_errored, i = 0, 0, 0, 0, 0, 0, 0 for file in input_files: if file.input_path == file_update.input_path: input_files[i] = file_update file = file_update if file.complete: processed_old_bytes += file.old_compressed_size processed_uncompressed_bytes += file.uncompressed_size if file.uncompressed_size is not None else 0 processed_new_bytes += file.new_compressed_size if file.new_compressed_size is not None else 0 processed_lines += file.total_lines if file.total_lines is not None else 0 files_processed += 1 if file.complete or file.error_message is not None else 0 files_errored += 1 if file.error_message is not None else 0 i += 1 if file_update.complete or file_update.error_message is not None: save_file_list(input_files, args.working, status_json, arg_string, script_type) log.debug(f"Finished file: {file_update.input_path}") current_time = time.time() progress_queue.put([current_time, processed_old_bytes]) first_time, first_bytes = progress_queue.peek() bytes_per_second = int((processed_old_bytes - first_bytes)/(current_time - first_time)) speed_queue.put(bytes_per_second) seconds_left = int((total_old_bytes - processed_old_bytes) / int(sum(speed_queue.list) / len(speed_queue.list))) minutes_left = int(seconds_left / 60) hours_left = int(minutes_left / 60) days_left = int(hours_left / 24) log.info( f"{(processed_old_bytes / (2**30)):.3f} gb at {(bytes_per_second / (2**20)):,.2f} mb/s, {(processed_old_bytes / total_old_bytes) * 100:.0f}% : " f"{(processed_uncompressed_bytes / (2**30)):.3f} gb uncompressed down to {(processed_new_bytes / (2**30)):.3f} gb compressed : " f"{(processed_old_bytes / processed_uncompressed_bytes):.3f} old ratio : {(processed_new_bytes / processed_uncompressed_bytes):.3f} new ratio : {(processed_new_bytes / processed_old_bytes):.3f} difference : " f"{files_processed}({files_errored})/{len(input_files)} files : " f"{(str(days_left) + 'd ' if days_left > 0 else '')}{hours_left - (days_left * 24)}:{minutes_left - (hours_left * 60):02}:{seconds_left - (minutes_left * 60):02} remaining : " f"{first_time}:{first_bytes}:{current_time}:{processed_old_bytes}:{processed_uncompressed_bytes}:{processed_new_bytes}:{total_old_bytes}:{int(sum(speed_queue.list))}:{len(speed_queue.list)}") log.info(f"{(processed_old_bytes / (2**30)):.2f} gb, {(processed_old_bytes / total_old_bytes) * 100:.0f}% : {files_processed}/{len(input_files)}")