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- [ContentStructure](https://github.com/matthewjdenny/ContentStructure) - Implements an extension to the [Topic-Partitioned Multinetwork Embeddings (TPME) model](http://dirichlet.net/pdf/krafft12topic-partitioned.pdf).
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- [DiagrammeR](https://github.com/rich-iannone/DiagrammeR) - Connects R, RStudio and JavaScript libraries to draw graph diagrams ([blog post](https://blog.rstudio.org/2015/05/01/rstudio-v0-99-preview-graphviz-and-diagrammer/)).
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- [dodgr](https://cran.r-project.org/package=dodgr) - Computes distances on dual-weighted directed graphs, such as street networks, using priority-queue shortest paths.
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- [EpiModel](https://cran.r-project.org/package=EpiModel) - Tools for simulating mathematical models of infectious disease dynamics ([presentation paper](https://doi.org/10.18637%2Fjss.v084.i08)).
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- [ergm](https://CRAN.R-project.org/package=ergm) - Estimation of Exponential Random Graph Models (ERGM).
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- [ERGM: edgecov and dyadcov Specifications](http://mjh4.blogspot.com/2012/09/ergm-edgecov-and-dyadcov-specifications.html).
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- [GERGM](https://CRAN.R-project.org/package=GERGM) - Estimation and diagnosis of the convergence of Generalized Exponential Random Graph Models (GERGM).
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