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tutorials, software, Francis Bacon, reorg'ed bibliographies

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@ -120,6 +120,7 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
- _[Encyclopedia of Social Networks](http://sk.sagepub.com/reference/socialnetworks)_, edited by George A. Barnett - Covers all sorts of network-related themes (many of them not formal) as well as social network analysis (2011). - _[Encyclopedia of Social Networks](http://sk.sagepub.com/reference/socialnetworks)_, edited by George A. Barnett - Covers all sorts of network-related themes (many of them not formal) as well as social network analysis (2011).
- _[The Oxford Handbook of the Economics of Networks](https://global.oup.com/academic/product/the-oxford-handbook-of-the-economics-of-networks-9780199948277)_, edited by Yann Bramoullé, Andrea Galeotti and Brian Rogers (2016). - _[The Oxford Handbook of the Economics of Networks](https://global.oup.com/academic/product/the-oxford-handbook-of-the-economics-of-networks-9780199948277)_, edited by Yann Bramoullé, Andrea Galeotti and Brian Rogers (2016).
- _[Neighbor Networks. Competitive Advantage Local and Personal](https://global.oup.com/academic/product/neighbor-networks-9780199570690)_, by Ronald S. Burt (2010). - _[Neighbor Networks. Competitive Advantage Local and Personal](https://global.oup.com/academic/product/neighbor-networks-9780199570690)_, by Ronald S. Burt (2010).
- _[Networks in Social Policy Problems](http://www.cambridge.org/mx/academic/subjects/physics/statistical-physics/networks-social-policy-problems)_, edited by Balázs Vedres and Marco Scotti (2012).
- _[Small Worlds: The Dynamics of Networks between Order and Randomness](http://press.princeton.edu/titles/6768.html)_, by Duncan J. Watts (2003). - _[Small Worlds: The Dynamics of Networks between Order and Randomness](http://press.princeton.edu/titles/6768.html)_, by Duncan J. Watts (2003).
- _[Towards Relational Sociology](https://www.routledge.com/products/9780415480147)_, by Nick Crossley (2011). - _[Towards Relational Sociology](https://www.routledge.com/products/9780415480147)_, by Nick Crossley (2011).
- _[Die Verbundenheit der Dinge. Eine Kulturgeschichte der Netze und Netzwerke [The Connectedness of Things. A Cultural History of Nets and Networks]](http://www.kulturverlag-kadmos.de/buch/die-verbundenheit-der-dinge.html)_, by Sebastian Gießmann, in German (2014). - _[Die Verbundenheit der Dinge. Eine Kulturgeschichte der Netze und Netzwerke [The Connectedness of Things. A Cultural History of Nets and Networks]](http://www.kulturverlag-kadmos.de/buch/die-verbundenheit-der-dinge.html)_, by Sebastian Gießmann, in German (2014).
@ -258,6 +259,8 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
## Review Articles ## Review Articles
> For even more awesome references, see the bibliographies [by the Historical Network Research Group](http://historicalnetworkresearch.org/resources/bibliography/) and [by Tom Brughmans](https://archaeologicalnetworks.wordpress.com/network-science-bibliography/).
### Archeological and Historical Networks ### Archeological and Historical Networks
1. [Analyser les réseaux du passé en archéologie et en histoire](http://nda.revues.org/2300), in French (_Les Nouvelles de l'Archéologie_, 2014). 1. [Analyser les réseaux du passé en archéologie et en histoire](http://nda.revues.org/2300), in French (_Les Nouvelles de l'Archéologie_, 2014).
@ -297,6 +300,8 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
### Economic, Political and Social Networks ### Economic, Political and Social Networks
> For even more awesome references, see [Eszter Hargittai's bibliography](http://eszter.com/contract.html#socnet).
1. [Brokerage](http://www.annualreviews.org/doi/abs/10.1146/annurev-soc-081309-150054) (_Annual Review of Sociology_, 2012). 1. [Brokerage](http://www.annualreviews.org/doi/abs/10.1146/annurev-soc-081309-150054) (_Annual Review of Sociology_, 2012).
- [Birds of a Feather: Homophily in Social Networks](http://www.annualreviews.org/doi/abs/10.1146/annurev.soc.27.1.415) (_Annual Review of Sociology_, 2001). - [Birds of a Feather: Homophily in Social Networks](http://www.annualreviews.org/doi/abs/10.1146/annurev.soc.27.1.415) (_Annual Review of Sociology_, 2001).
- [Mixed-Method Approaches to Social Network Analysis](http://eprints.ncrm.ac.uk/842/) (ESRC NCRM Discussion Paper, 2010). - [Mixed-Method Approaches to Social Network Analysis](http://eprints.ncrm.ac.uk/842/) (ESRC NCRM Discussion Paper, 2010).
@ -313,6 +318,7 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
1. [ArcGIS Network Analyst](http://www.esri.com/software/arcgis/extensions/networkanalyst) - Network-based spatial analysis software for solving complex routing problems. 1. [ArcGIS Network Analyst](http://www.esri.com/software/arcgis/extensions/networkanalyst) - Network-based spatial analysis software for solving complex routing problems.
- [Cytoscape](http://www.cytoscape.org/) - Cross-platform Java program to build, analyze and visualize networks. Also a JavaScript library. - [Cytoscape](http://www.cytoscape.org/) - Cross-platform Java program to build, analyze and visualize networks. Also a JavaScript library.
- [Network Analysis with Cytoscape Tutorial](https://archaeologicalnetworks.wordpress.com/resources/#cytoscape) - Illustrated through an archaeological and geographical case study (2013).
- [Discourse Network Analyzer (DNA)](http://www.philipleifeld.com/discourse-network-analyzer/discourse-network-analyzer-dna.html) - Qualitative content analysis tool with network export facilities, written in Java with R integration. - [Discourse Network Analyzer (DNA)](http://www.philipleifeld.com/discourse-network-analyzer/discourse-network-analyzer-dna.html) - Qualitative content analysis tool with network export facilities, written in Java with R integration.
- [E-Net](https://sites.google.com/site/enetsoftware1/) - Windows program for ego network analysis. - [E-Net](https://sites.google.com/site/enetsoftware1/) - Windows program for ego network analysis.
- [Gephi](https://gephi.github.io/) - Cross-platform, free and open source tool for network visualization. - [Gephi](https://gephi.github.io/) - Cross-platform, free and open source tool for network visualization.
@ -321,6 +327,7 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
- [GLEAMviz Simulator](http://www.gleamviz.org/) - Cross-platform tool intended for the prediction of human epidemics. - [GLEAMviz Simulator](http://www.gleamviz.org/) - Cross-platform tool intended for the prediction of human epidemics.
- [Graphviz](http://www.graphviz.org/) - Cross-platform software to draw graphs in the DOT graph drawing language. - [Graphviz](http://www.graphviz.org/) - Cross-platform software to draw graphs in the DOT graph drawing language.
- [Graphy](https://github.com/bruce/graphy) - Graph theory library written in Ruby. - [Graphy](https://github.com/bruce/graphy) - Graph theory library written in Ruby.
- [Mathematica](https://www.wolfram.com/mathematica/) - Cross-platform program with graph theory and network analysis functionalities.
- [MuxViz](http://muxviz.net/) - Cross-platform, free and open source tool to study multilayer networks, based on R and GNU Octave. - [MuxViz](http://muxviz.net/) - Cross-platform, free and open source tool to study multilayer networks, based on R and GNU Octave.
- [Neo4j](http://neo4j.com/) - Open source, scalable graph database, used by companies like [Linkurious](http://linkurio.us/). - [Neo4j](http://neo4j.com/) - Open source, scalable graph database, used by companies like [Linkurious](http://linkurio.us/).
- [NodeXL](http://nodexl.codeplex.com/) - Free, open-source template to explore network graphs with Microsoft Excel. - [NodeXL](http://nodexl.codeplex.com/) - Free, open-source template to explore network graphs with Microsoft Excel.
@ -345,6 +352,7 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
- [VennMaker: An Actor-Centered Interactive Network Mapping Tool](http://www.vennmaker.com/?lang=en) - Cross-platform Java program for ego network analysis. - [VennMaker: An Actor-Centered Interactive Network Mapping Tool](http://www.vennmaker.com/?lang=en) - Cross-platform Java program for ego network analysis.
- [VennMaker for Historians: Sources, Social Networks and Software](http://revistes.uab.cat/redes/article/view/v21-during-bixier-kronenwett-stark) (also available in Spanish; 2011). - [VennMaker for Historians: Sources, Social Networks and Software](http://revistes.uab.cat/redes/article/view/v21-during-bixier-kronenwett-stark) (also available in Spanish; 2011).
- [Visone](http://visone.info/) - Cross-platform Java network analysis and visualization program, free for noncommercial use. - [Visone](http://visone.info/) - Cross-platform Java network analysis and visualization program, free for noncommercial use.
- [Network Analysis with Visone Tutorial](http://visone.info/wiki/images/8/8f/VisoneTutorial-archeology.zip) - Illustrated through an archaeological case study (2015).
- [VOSviewer](http://www.vosviewer.com/) - Cross-platform Java tool for constructing and visualizing bibliometric networks. - [VOSviewer](http://www.vosviewer.com/) - Cross-platform Java tool for constructing and visualizing bibliometric networks.
### Algorithms ### Algorithms
@ -505,7 +513,6 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
- [Plan interactif du métro](http://www.jeromecukier.net/projects/metro/map.html) - Interactive visualization of the Paris metro network, drawn with d3.js, in French. - [Plan interactif du métro](http://www.jeromecukier.net/projects/metro/map.html) - Interactive visualization of the Paris metro network, drawn with d3.js, in French.
- [Scale-Free Networks](http://www.barabasilab.com/pubs/CCNR-ALB_Publications/200305-01_SciAmer-ScaleFree/200305-01_SciAmer-ScaleFree.pdf) - Early, accessible formulation of the "networks are everywhere" argument. - [Scale-Free Networks](http://www.barabasilab.com/pubs/CCNR-ALB_Publications/200305-01_SciAmer-ScaleFree/200305-01_SciAmer-ScaleFree.pdf) - Early, accessible formulation of the "networks are everywhere" argument.
- [Should I do Social Network Analysis?](https://cvcedhlab.hypotheses.org/125). - [Should I do Social Network Analysis?](https://cvcedhlab.hypotheses.org/125).
- [Social Networks](http://eszter.com/contract.html#socnet) - Reading list of sociological classics about social networks: Bonacich, Borgatti and Everett, Burt, Emirbayer, Freeman, Granovetter, Padgett and Ansell, Simmel, Wellman, etc.
- [Tarot Cards for Principles of Complex Systems and Complex Networks](https://www.uvm.edu/~pdodds/teaching/courses/2016-01UVM-303/tarotcards/) - Part of a course by Peter Sheridan Dodds. - [Tarot Cards for Principles of Complex Systems and Complex Networks](https://www.uvm.edu/~pdodds/teaching/courses/2016-01UVM-303/tarotcards/) - Part of a course by Peter Sheridan Dodds.
- [The Ties that Divide: A Network Analysis of the International Monetary System, 1890–1910](http://www.stats.ox.ac.uk/~snijders/FlandreauJobst2005.pdf) and [The Empirics of International Currencies: Network Externalities, History and Persistence](http://onlinelibrary.wiley.com/doi/10.1111/j.1468-0297.2009.02219.x/abstract) - Network analysis of the foreign exchange system in the late 19th century ([data](http://eh.net/database/international-currencies-1890-1910/)). - [The Ties that Divide: A Network Analysis of the International Monetary System, 1890–1910](http://www.stats.ox.ac.uk/~snijders/FlandreauJobst2005.pdf) and [The Empirics of International Currencies: Network Externalities, History and Persistence](http://onlinelibrary.wiley.com/doi/10.1111/j.1468-0297.2009.02219.x/abstract) - Network analysis of the foreign exchange system in the late 19th century ([data](http://eh.net/database/international-currencies-1890-1910/)).
- [Using Metadata to Find Paul Revere](https://kieranhealy.org/blog/archives/2013/06/09/using-metadata-to-find-paul-revere/) and [The Other Ride of Paul Revere: The Brokerage Role in the Making of the American Revolution](http://www.sscnet.ucla.edu/polisci/faculty/chwe/ps269/han.pdf) - Network analysis applied to American revolutionaries. - [Using Metadata to Find Paul Revere](https://kieranhealy.org/blog/archives/2013/06/09/using-metadata-to-find-paul-revere/) and [The Other Ride of Paul Revere: The Brokerage Role in the Making of the American Revolution](http://www.sscnet.ucla.edu/polisci/faculty/chwe/ps269/han.pdf) - Network analysis applied to American revolutionaries.
@ -515,7 +522,8 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
> Series of blog posts on network topics. > Series of blog posts on network topics.
> For more blog posts on manipulating networks with R, try searching for [‘networks’](http://www.r-bloggers.com/?s=networks) or [‘social network analysis’](http://www.r-bloggers.com/?s=social+network+analysis) on the [R-Bloggers](http://www.r-bloggers.com/) R blogs aggregator. > For more blog posts on manipulating networks with R, try searching for [‘networks’](http://www.r-bloggers.com/?s=networks) or [‘social network analysis’](http://www.r-bloggers.com/?s=social+network+analysis) on the [R-Bloggers](http://www.r-bloggers.com/) R blogs aggregator.
1. [Blog Posts About Network Analysis by Martin Grandjean](http://www.martingrandjean.ch/tag/analyse-de-reseau/), in English and French (mostly network visualizations; also try the ‘[social networks](http://www.martingrandjean.ch/tag/reseaux-sociaux/)’ tag). 1. [Archaeological Networks](http://archaeologicalnetworks.wordpress.com/) - Tom Brughmans' blog.
- [Blog Posts About Network Analysis by Martin Grandjean](http://www.martingrandjean.ch/tag/analyse-de-reseau/), in English and French (mostly network visualizations; also try the ‘[social networks](http://www.martingrandjean.ch/tag/reseaux-sociaux/)’ tag).
- [Blog Posts About Networks by Aaron Clauset](https://www.cs.unm.edu/~aaron/blog/archives/networks/index.htm). - [Blog Posts About Networks by Aaron Clauset](https://www.cs.unm.edu/~aaron/blog/archives/networks/index.htm).
- [Blog Posts About Networks by Baptiste Coulmont](http://coulmont.com/index.php?s=r%C3%A9seaux), in French. - [Blog Posts About Networks by Baptiste Coulmont](http://coulmont.com/index.php?s=r%C3%A9seaux), in French.
- [Blog Posts About Networks by Cosma Shalizi](http://bactra.org/weblog/cat_networks.html). - [Blog Posts About Networks by Cosma Shalizi](http://bactra.org/weblog/cat_networks.html).
@ -587,6 +595,7 @@ Inspired by [Awesome Deep Learning](https://github.com/ChristosChristofidis/awes
- [The Oracle of Bacon](https://oracleofbacon.org/) - Based on an [online game](https://en.wikipedia.org/wiki/Six_Degrees_of_Kevin_Bacon) that resulted in a [charity](http://www.sixdegrees.org/). - [The Oracle of Bacon](https://oracleofbacon.org/) - Based on an [online game](https://en.wikipedia.org/wiki/Six_Degrees_of_Kevin_Bacon) that resulted in a [charity](http://www.sixdegrees.org/).
- [Panel: Six Degrees of Separation](https://www.cornell.edu/video/six-degrees-of-separation-panel) - Video of a conference at Cornell University, featuring Duncan Watts, Steven Strogatz, Jon Kleinberg and other speakers. - [Panel: Six Degrees of Separation](https://www.cornell.edu/video/six-degrees-of-separation-panel) - Video of a conference at Cornell University, featuring Duncan Watts, Steven Strogatz, Jon Kleinberg and other speakers.
- [Patterns in the Ivy: The Small World of Metal](http://badhessian.org/2013/09/patterns-in-the-ivy-the-small-world-of-metal/) - Example of a two-mode network analysis based on metal artists and bands. - [Patterns in the Ivy: The Small World of Metal](http://badhessian.org/2013/09/patterns-in-the-ivy-the-small-world-of-metal/) - Example of a two-mode network analysis based on metal artists and bands.
- [Six Degrees of Francis Bacon](http://sixdegreesoffrancisbacon.com/) - Interactive visualization of a well-documented early modern historical network.
- [Six Degrees of Separation](https://en.wikipedia.org/wiki/Six_degrees_of_separation) - Wikipedia English entry. - [Six Degrees of Separation](https://en.wikipedia.org/wiki/Six_degrees_of_separation) - Wikipedia English entry.
### Two-Mode Networks ### Two-Mode Networks